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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110904788_110905764_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
110904788 - 110905764
Intron Length:
977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CACTTTTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTCACTT
Flanking Amino Acid:
RKSAKQCKARWYEWLDPSIK
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.6
30.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
68.5
0.42
1
64.9
39.9
Minor 5ss
33.1
-1.9
3.2
40.3
40.2
Minor BPS
56.7
0.29
1.8
79.05
38

Associated Gene:

Gene:
CDC5L
Ensembl Gene ID:
ENSAPLG00000015586
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039509
110900875 - 110955915
55041
ENSAPLT00000018622
110900875 - 110955915
55041