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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110905927_110906355_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
110905927 - 110906355
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTTAC
5'SS Class:
major
3'SS Sequence:
AATGTGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CAGTTCTGACAT
Flanking Amino Acid:
AQCLEHYEFLLDKAAQRDNE
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
67.8
33.5
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
70.5
0.46
1
66.6
44.2
Minor 5ss
38
-1.4
3
53.4
43.8
Minor BPS
45.6
-0.2
1.8
58.61
44.3

Associated Gene:

Gene:
CDC5L
Ensembl Gene ID:
ENSAPLG00000015586
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018622
110900875 - 110955915
55041
ENSAPLT00000016277
110904684 - 110934741
30058
ENSAPLT00000039509
110900875 - 110955915
55041