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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110906484_110907323_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
110906484 - 110907323
Intron Length:
840

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TACACTATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTATTTTTAAGT
Flanking Amino Acid:
ARPDPIDMDEDELEMLSEAR
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.8
83.9
34
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.2
0.52
0.9
66.2
39
Minor 5ss
24.9
-2.9
3.8
40.4
45.3
Minor BPS
62.8
0.48
1.6
75.56
41.8

Associated Gene:

Gene:
CDC5L
Ensembl Gene ID:
ENSAPLG00000015586
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018622
110900875 - 110955915
55041
ENSAPLT00000016277
110904684 - 110934741
30058
ENSAPLT00000039509
110900875 - 110955915
55041