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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110907424_110907654_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
110907424 - 110907654
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
ACTGTTTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
GGCACTTCAAAT
Flanking Amino Acid:
KAREKQLEEARRLAALQKRR
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.8
38.3
Major BPS
77.3
0.68
1
81.5
27
Major PPT
76.4
0.59
0.8
74.1
36.1
Minor 5ss
47.5
-0.2
2.8
64.1
47.4
Minor BPS
47.7
-0
1.7
60.08
42.8

Associated Gene:

Gene:
CDC5L
Ensembl Gene ID:
ENSAPLG00000015586
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039509
110900875 - 110955915
55041
ENSAPLT00000018622
110900875 - 110955915
55041
ENSAPLT00000016277
110904684 - 110934741
30058