Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110907874_110909249_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

110907874 - 110909249

Intron Length:

1376

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATC|GTAAGTATG

5'SS Class:

major

3'SS Sequence:

TCTGTATTAATAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

TCTGTATTAATA

Flanking Amino Acid:

RQQDLDGELRSEREGRERKK

Intron Amino Acid Position:

176

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.9

0.54

1.3

74.5

41.9

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

70.6

0.46

0.9

66.5

38.6

Minor 5ss

40.9

-1

2.8

52.1

38.9

Minor BPS

57.4

0.23

1.7

67.42

39.7

Associated Gene:

Gene:

CDC5L

Ensembl Gene ID:

ENSAPLG00000015586

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039509

110900875 - 110955915

55041

ENSAPLT00000018622

110900875 - 110955915

55041

ENSAPLT00000016277

110904684 - 110934741

30058