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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110911069_110913668_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
110911069 - 110913668
Intron Length:
2600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
GCACTTCCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAA
U12 Branch Point Sequence:
CGTATTTGCACT
Flanking Amino Acid:
TPNTVLSTPFRTPSQGQEGL
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
62.4
0.31
1
64
32.1
Major PPT
67.7
0.4
0.9
58.7
38.1
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
45
-0.3
1.9
61.44
42.6

Associated Gene:

Gene:
CDC5L
Ensembl Gene ID:
ENSAPLG00000015586
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039509
110900875 - 110955915
55041
ENSAPLT00000018622
110900875 - 110955915
55041
ENSAPLT00000016277
110904684 - 110934741
30058