Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110916557_110916893_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

110916557 - 110916893

Intron Length:

337

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTGGA

5'SS Class:

strong_major

3'SS Sequence:

TATTCTTGGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTTTTTATT

Flanking Amino Acid:

VQKNLPRPSEVNETILRPLN

Intron Amino Acid Position:

474

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.81

0.9

75.2

35.1

Major BPS

96.5

1.15

0.6

34.2

Major PPT

71.5

0.48

1.1

69.3

41.3

Minor 5ss

33.8

-1.8

3.2

40.4

Minor BPS

69.2

0.69

1.5

86.8

32.8

Associated Gene:

Gene:

CDC5L

Ensembl Gene ID:

ENSAPLG00000015586

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018622

110900875 - 110955915

55041

ENSAPLT00000016277

110904684 - 110934741

30058

ENSAPLT00000039509

110900875 - 110955915

55041