About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110917140_110919790_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
110917140 - 110919790
Intron Length:
2651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TCATTTCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGTATTGTAACT
Flanking Amino Acid:
EKFSKEDLKKAQDLLAQEME
Intron Amino Acid Position:
556

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
74.4
0.55
0.9
70.2
34.9
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
54.5
0.22
2
76.69
40.1

Associated Gene:

Gene:
CDC5L
Ensembl Gene ID:
ENSAPLG00000015586
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039509
110900875 - 110955915
55041
ENSAPLT00000016277
110904684 - 110934741
30058