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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110917140_110933246_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
110917140 - 110933246
Intron Length:
16107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTCGTTCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTCTGGATAATT
Flanking Amino Acid:
EKFSKEDLKKINRGHMTTEA
Intron Amino Acid Position:
751

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
75.7
0.58
1
72.1
38
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
45.5
-0.2
2.6
72.18
45.2

Associated Gene:

Gene:
CDC5L
Ensembl Gene ID:
ENSAPLG00000015586
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018622
110900875 - 110955915
55041