Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110933460_110934636_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

110933460 - 110934636

Intron Length:

1177

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGATTG

5'SS Class:

strong_major

3'SS Sequence:

GTTTTCCTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATGAT

U12 Branch Point Sequence:

AGGCATGTGACT

Flanking Amino Acid:

EDAAIPRRLECLKEDVQRQQ

Intron Amino Acid Position:

693

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.5

0.88

0.8

77.6

33.4

Major BPS

76.8

0.67

40.9

Major PPT

88.1

0.86

0.7

85.4

29.3

Minor 5ss

36.1

-1.6

3.2

46.6

48.7

Minor BPS

42.1

-0.5

2.1

56.25

40.1

Associated Gene:

Gene:

CDC5L

Ensembl Gene ID:

ENSAPLG00000015586

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039509

110900875 - 110955915

55041

ENSAPLT00000018622

110900875 - 110955915

55041

ENSAPLT00000016277

110904684 - 110934741

30058