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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111119569_111175309_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111119569 - 111175309
Intron Length:
55741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTACGTAAT
5'SS Class:
major
3'SS Sequence:
CTTTCTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
CTTTCTTTGACA
Flanking Amino Acid:
HKIGPLSPFTSAYRRNGMTF
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
72.2
39.1
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
82.1
0.72
0.9
79.4
32.6
Minor 5ss
38.5
-1.3
3.1
56.2
42.2
Minor BPS
78.9
0.9
1.1
81.99
33.2

Associated Gene:

Gene:
SUPT3H
Ensembl Gene ID:
ENSAPLG00000015836
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016536
111118028 - 111384839
266812