About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11117169_11123017_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11117169 - 11123017
Intron Length:
5849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTCTTTTAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAA
U12 Branch Point Sequence:
CTTCTTTTAATT
Flanking Amino Acid:
TSKAEEEELDESNPFYEPKS
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.5
40.6
Major BPS
74.9
0.62
1
67.3
39.2
Major PPT
76.4
0.59
0.9
78.7
33.5
Minor 5ss
40.6
-1
2.8
48.1
41.6
Minor BPS
70.3
0.72
1.2
80.3
36.2

Associated Gene:

Gene:
EHBP1
Ensembl Gene ID:
ENSAPLG00000006773
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035880
11010262 - 11214893
204632
ENSAPLT00000021322
11010262 - 11214893
204632
ENSAPLT00000047278
11015122 - 11214893
199772
ENSAPLT00000007056
11010262 - 11189599
179338
ENSAPLT00000039191
11010262 - 11214893
204632
ENSAPLT00000036041
11010262 - 11214893
204632