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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111175421_111177718_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111175421 - 111177718
Intron Length:
2298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGGT
5'SS Class:
major
3'SS Sequence:
TTTTCTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GATTTAGTAACA
Flanking Amino Acid:
TKSKQRKRKKSTAACGIEAQ
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
70.7
39.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
89
0.88
0.8
84.5
30.4
Minor 5ss
40.6
-1.1
3.2
58.8
45.7
Minor BPS
49
-0
2.2
66.28
39.7

Associated Gene:

Gene:
SUPT3H
Ensembl Gene ID:
ENSAPLG00000015836
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016536
111118028 - 111384839
266812