About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111178550_111179154_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111178550 - 111179154
Intron Length:
605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ACCTATTTAATA
Flanking Amino Acid:
AYLAYETVAQLVDMALLVKQ
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
78.6
37.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
86.6
0.82
0.7
81.4
23.5
Minor 5ss
31.6
-2.1
3.1
38.7
46.6
Minor BPS
58.5
0.26
1.5
61.94
39

Associated Gene:

Gene:
SUPT3H
Ensembl Gene ID:
ENSAPLG00000015836
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016536
111118028 - 111384839
266812