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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111181957_111207376_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111181957 - 111207376
Intron Length:
25420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTCTT
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTTTGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATCAT
U12 Branch Point Sequence:
TGTACTTCTACT
Flanking Amino Acid:
IDDVKQERMERAERQTRMMD
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.7
34.8
Major BPS
66.8
0.42
1.1
68
37.7
Major PPT
76.7
0.6
1
76.7
36.8
Minor 5ss
40.2
-1.1
3.1
59.2
45.2
Minor BPS
51.4
0.12
1.9
74.14
42.2

Associated Gene:

Gene:
SUPT3H
Ensembl Gene ID:
ENSAPLG00000015836
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016536
111118028 - 111384839
266812