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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111209189_111210341_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111209189 - 111210341
Intron Length:
1153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGTAA
5'SS Class:
major
3'SS Sequence:
TTTTTTCTCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTTTTCTCATAG
Flanking Amino Acid:
DLLFLMRKDKKKLRRLLKYM
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
66.9
34.4
Major BPS
84.6
0.86
1
74
41.2
Major PPT
87.6
0.85
0.6
84.5
23.6
Minor 5ss
41.5
-0.9
3.2
54.8
49.4
Minor BPS
50.1
-0.1
2
64.63
43.1

Associated Gene:

Gene:
SUPT3H
Ensembl Gene ID:
ENSAPLG00000015836
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016536
111118028 - 111384839
266812