About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11131959_11138312_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11131959 - 11138312
Intron Length:
6354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTTTT
5'SS Class:
major
3'SS Sequence:
ACTTAATTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TCCCACTTAATT
Flanking Amino Acid:
NQEEKAAKITELINKLNFLD
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.64
1.2
79.9
36
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
72.4
0.5
0.9
63.1
42.4
Minor 5ss
41.1
-1
3.1
58.6
46
Minor BPS
63.3
0.5
1.5
74.17
42.9

Associated Gene:

Gene:
EHBP1
Ensembl Gene ID:
ENSAPLG00000006773
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035880
11010262 - 11214893
204632
ENSAPLT00000021322
11010262 - 11214893
204632
ENSAPLT00000007056
11010262 - 11189599
179338
ENSAPLT00000047278
11015122 - 11214893
199772