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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11142388_11169014_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11142388 - 11169014
Intron Length:
26627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGCTGG
5'SS Class:
major
3'SS Sequence:
CCTGTGCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGTGTTTTACCT
Flanking Amino Acid:
DKEWTFVIENESPSGRRKAL
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.3
60.6
46.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
76.9
0.6
0.9
72.6
37.6
Minor 5ss
44.6
-0.6
2.8
54.8
43.1
Minor BPS
57.7
0.32
1.7
75.46
41.9

Associated Gene:

Gene:
EHBP1
Ensembl Gene ID:
ENSAPLG00000006773
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039191
11010262 - 11214893
204632
ENSAPLT00000036041
11010262 - 11214893
204632
ENSAPLT00000035880
11010262 - 11214893
204632
ENSAPLT00000007056
11010262 - 11189599
179338
ENSAPLT00000047278
11015122 - 11214893
199772