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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11142388_11178766_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11142388 - 11178766
Intron Length:
36379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTGTGCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGTGTTTTACCT
Flanking Amino Acid:
NVEITVTLFKESPSGRRKAL
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
76.9
0.6
0.9
72.6
37.6
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
57.7
0.32
1.7
75.46
41.9

Associated Gene:

Gene:
EHBP1
Ensembl Gene ID:
ENSAPLG00000006773
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021322
11010262 - 11214893
204632