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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111430946_111469598_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111430946 - 111469598
Intron Length:
38653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTACTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTGTTATTAACG
Flanking Amino Acid:
VTVDGPREPRRHRQKLDDSK
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.4
0.71
0.9
73
41.9
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
67.3
0.4
1.7
72.1
40.7

Associated Gene:

Gene:
RUNX2
Ensembl Gene ID:
ENSAPLG00000011653
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043170
111353213 - 111572007
218795
ENSAPLT00000012168
111353213 - 111504847
151635