About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111479657_111571324_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111479657 - 111571324
Intron Length:
91668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGACC
5'SS Class:
strong_major
3'SS Sequence:
ATCTTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TGTGACTCAATG
Flanking Amino Acid:
AITDVPRRLSDSEPCTPDAP
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.9
36.4
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
83.4
0.75
0.8
77.5
30.5
Minor 5ss
32.9
-2
3.2
43.7
43.7
Minor BPS
48.8
-0.2
1.9
57.49
44

Associated Gene:

Gene:
RUNX2
Ensembl Gene ID:
ENSAPLG00000011653
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043170
111353213 - 111572007
218795