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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11169069_11178766_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11169069 - 11178766
Intron Length:
9698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
TATTTTTAGACC
Flanking Amino Acid:
NVEITVTLFKDPHAEEFEDK
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
87.5
0.84
0.7
81.2
36.5
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
57.7
0.22
1.6
69.43
36.5

Associated Gene:

Gene:
EHBP1
Ensembl Gene ID:
ENSAPLG00000006773
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035880
11010262 - 11214893
204632
ENSAPLT00000007056
11010262 - 11189599
179338
ENSAPLT00000047278
11015122 - 11214893
199772
ENSAPLT00000039191
11010262 - 11214893
204632
ENSAPLT00000036041
11010262 - 11214893
204632