Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111693714_111696187_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

111693714 - 111696187

Intron Length:

2474

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAAGGT

5'SS Class:

strong_major

3'SS Sequence:

TCTTTTGGTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGGACAT

U12 Branch Point Sequence:

TTTTCTCTTCCT

Flanking Amino Acid:

NLLPKLHVVKIVAKKYRNFE

Intron Amino Acid Position:

340

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

72.3

37.6

Major BPS

47.5

-0.1

1.3

52.5

43.3

Major PPT

0.61

0.9

76.9

37.3

Minor 5ss

31.5

-2.1

3.5

47.6

47.9

Minor BPS

41.8

-0.5

3.7

80.68

41.1

Associated Gene:

Gene:

CLIC5

Ensembl Gene ID:

ENSAPLG00000013722

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046418

111692133 - 111743715

51583

ENSAPLT00000014302

111693546 - 111758593

65048