About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111787881_111788671_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111787881 - 111788671
Intron Length:
791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGACCTTTATCT
Flanking Amino Acid:
IVFNKSDGFPFGNHGYDNNL
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
84.7
0.78
0.7
77.8
35.6
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
61
0.42
1.6
75.3
41.1

Associated Gene:

Gene:
ENPP5
Ensembl Gene ID:
ENSAPLG00000013625
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014195
111787194 - 111792743
5550