Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11178863_11188965_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11178863 - 11188965

Intron Length:

10103

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTAGTTAA

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTTCTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTAAGAC

U12 Branch Point Sequence:

TTTAAGACAACT

Flanking Amino Acid:

TRRSRRKSSKAHSWQPGIKN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.7

0.82

1.1

81.4

27.6

Major BPS

57.5

0.19

1.1

55.1

40.5

Major PPT

88.3

0.86

0.6

85.2

22.2

Minor 5ss

35.9

-1.6

2.6

41.2

45.2

Minor BPS

42.5

-0.4

2.5

71.5

44.5

Associated Gene:

Gene:

EHBP1

Ensembl Gene ID:

ENSAPLG00000006773

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035880

11010262 - 11214893

204632

ENSAPLT00000021322

11010262 - 11214893

204632

ENSAPLT00000047278

11015122 - 11214893

199772

ENSAPLT00000007056

11010262 - 11189599

179338

ENSAPLT00000039191

11010262 - 11214893

204632

ENSAPLT00000036041

11010262 - 11214893

204632