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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111788849_111791851_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111788849 - 111791851
Intron Length:
3003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTTTGTTTGAAG
Flanking Amino Acid:
SPAVAILPKEGKLDEVYEAL
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.5
37.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
74.5
0.55
1.1
75.2
38.8
Minor 5ss
31.7
-2.1
3.6
47.8
47.9
Minor BPS
49.4
-0.1
2
60.07
42

Associated Gene:

Gene:
ENPP5
Ensembl Gene ID:
ENSAPLG00000013625
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014195
111787194 - 111792743
5550