Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111815225_111870109_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

111815225 - 111870109

Intron Length:

54885

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACCGTGC

5'SS Class:

major

3'SS Sequence:

TTTTCATTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTAATCTTCACT

Flanking Amino Acid:

QSVFESEDSKEKFEGLFRAY

Intron Amino Acid Position:

366

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.5

0.36

1.3

55.9

44.3

Major BPS

100

1.24

0.5

100

Major PPT

90.2

0.9

0.7

85.3

Minor 5ss

41.6

-0.9

3.4

59.3

45.4

Minor BPS

0.49

1.8

81.22

40.2

Associated Gene:

Gene:

RCAN2

Ensembl Gene ID:

ENSAPLG00000026664

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027271

111804699 - 111874945

70247

ENSAPLT00000025620

111804699 - 111878563

73865