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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11189024_11214472_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11189024 - 11214472
Intron Length:
25449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
CTTTTTTCAACA
Flanking Amino Acid:
QELMVECTKKWQPDKLVVVW
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
69.6
41.1
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
84
0.77
0.8
81.1
29.5
Minor 5ss
32.8
-2
3.1
39.9
40.3
Minor BPS
65.9
0.49
1.5
74.67
37.4

Associated Gene:

Gene:
EHBP1
Ensembl Gene ID:
ENSAPLG00000006773
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021322
11010262 - 11214893
204632
ENSAPLT00000047278
11015122 - 11214893
199772
ENSAPLT00000039191
11010262 - 11214893
204632
ENSAPLT00000036041
11010262 - 11214893
204632
ENSAPLT00000035880
11010262 - 11214893
204632