Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111898450_111899318_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

111898450 - 111899318

Intron Length:

869

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAGTT

5'SS Class:

strong_major

3'SS Sequence:

TTCTCCTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTCAG

U12 Branch Point Sequence:

TTTTCTTCAGGT

Flanking Amino Acid:

KKVVNPIRIQNFTVPAGDML

Intron Amino Acid Position:

354

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.2

0.92

0.8

84.1

26.5

Major BPS

63.4

0.33

1.6

73.6

41.8

Major PPT

89.9

0.9

0.6

88.2

21.5

Minor 5ss

30.9

-2.2

3.5

46.6

48.7

Minor BPS

53.9

0.2

2.1

79.98

42.3

Associated Gene:

Gene:

CYP39A1

Ensembl Gene ID:

ENSAPLG00000013275

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030197

111891338 - 111914583

23246

ENSAPLT00000013842

111891973 - 111914216

22244