Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111902517_111903956_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

111902517 - 111903956

Intron Length:

1440

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAACATC

5'SS Class:

strong_major

3'SS Sequence:

TATTTTGTAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TATTTTGTAACA

Flanking Amino Acid:

RTNPSETTSKTLLQHLLDNL

Intron Amino Acid Position:

246

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

78.6

35.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

77.5

0.62

73.6

40.4

Minor 5ss

43.3

-0.7

60.2

44.5

Minor BPS

61.4

0.35

75.62

35.9

Associated Gene:

Gene:

CYP39A1

Ensembl Gene ID:

ENSAPLG00000013275

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030197

111891338 - 111914583

23246

ENSAPLT00000013842

111891973 - 111914216

22244