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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111906672_111907954_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111906672 - 111907954
Intron Length:
1283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTATTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
ACTTCCCAAACT
Flanking Amino Acid:
QAVQQAVENAVSVPAEAFYQ
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
72.3
39.5
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
82.2
0.73
0.9
82
34.8
Minor 5ss
35.7
-1.6
3.3
45.9
49.3
Minor BPS
58.3
0.34
2
79.02
43

Associated Gene:

Gene:
CYP39A1
Ensembl Gene ID:
ENSAPLG00000013275
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013842
111891973 - 111914216
22244