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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111906672_111914036_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111906672 - 111914036
Intron Length:
7365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTATTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
ACTTCCCAAACT
Flanking Amino Acid:
PGVYRASQKQVSVPAEAFYQ
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
32.5
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
82.2
0.73
0.9
82
34.8
Minor 5ss
31.9
-2.1
3.6
47.6
48
Minor BPS
58.3
0.34
2
79.02
43

Associated Gene:

Gene:
CYP39A1
Ensembl Gene ID:
ENSAPLG00000013275
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030197
111891338 - 111914583
23246