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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111917615_111918968_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111917615 - 111918968
Intron Length:
1354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACAAATC
5'SS Class:
major
3'SS Sequence:
TCCTTCTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
GGACCCAAACTC
Flanking Amino Acid:
SACAATVAELVTFPLDLTKT
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
72.5
37.2
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
86.3
0.82
0.7
84.4
23.5
Minor 5ss
36.3
-1.6
3.3
51.9
44.8
Minor BPS
38.7
-0.8
1.9
43.35
37.4

Associated Gene:

Gene:
SLC25A27
Ensembl Gene ID:
ENSAPLG00000013008
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013570
111917512 - 111924645
7134