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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111919161_111919896_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111919161 - 111919896
Intron Length:
736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGATTATC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTTAC
U12 Branch Point Sequence:
TCAGACTTACCT
Flanking Amino Acid:
GATPAVYRHIVYSGVRMVAY
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
83.2
28.3
Major BPS
56
0.15
1.2
49.3
37.7
Major PPT
84.4
0.77
0.8
80.2
32
Minor 5ss
34.9
-1.7
2.8
45.4
42.7
Minor BPS
50.7
0.1
1.9
69.44
47

Associated Gene:

Gene:
SLC25A27
Ensembl Gene ID:
ENSAPLG00000013008
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013570
111917512 - 111924645
7134