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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111920633_111920953_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
111920633 - 111920953
Intron Length:
321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTCAGTTCT
5'SS Class:
major
3'SS Sequence:
ACTTTGATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TCTCCATTAAAC
Flanking Amino Acid:
GKRKLEGKPLRFRGVHHAFM
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.3
72.7
39.4
Major BPS
84
0.85
0.9
75
39.9
Major PPT
73.9
0.54
0.9
70.8
39.2
Minor 5ss
38.7
-1.3
2.8
52.5
43.9
Minor BPS
60.3
0.3
1.7
70.75
39.8

Associated Gene:

Gene:
SLC25A27
Ensembl Gene ID:
ENSAPLG00000013008
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013570
111917512 - 111924645
7134