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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111921793_111922459_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
111921793 - 111922459
Intron Length:
667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCGTGC
5'SS Class:
major
3'SS Sequence:
TTGTTATTGATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTGTTATTGATA
Flanking Amino Acid:
TDNSLTHSVASGCSGLVAAV
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.2
0.26
1.2
52
42
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
72.3
0.5
1
69.6
40.7
Minor 5ss
36.1
-1.6
3.5
50.3
46.3
Minor BPS
59.4
0.29
1.6
70.49
35.9

Associated Gene:

Gene:
SLC25A27
Ensembl Gene ID:
ENSAPLG00000013008
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013570
111917512 - 111924645
7134