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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111932788_111933261_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111932788 - 111933261
Intron Length:
474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
AACCTTTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTCAA
U12 Branch Point Sequence:
TACTCCTTCACT
Flanking Amino Acid:
QNDNLADCSAECSEYTCNLK
Intron Amino Acid Position:
2214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
66.8
0.42
1.1
69.4
37.7
Major PPT
74.8
0.56
0.8
69.5
35.8
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
72.3
0.78
1.7
85.03
41.4

Associated Gene:

Gene:
TDRD6
Ensembl Gene ID:
ENSAPLG00000021604
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038419
111926148 - 111936933
10786