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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111934604_111935347_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111934604 - 111935347
Intron Length:
744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGTGC
5'SS Class:
major
3'SS Sequence:
TCCTCTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTAAT
U12 Branch Point Sequence:
AGCTTGCTAACA
Flanking Amino Acid:
IPDRAYRSPKAINHAAENTL
Intron Amino Acid Position:
2284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
65
42.1
Major BPS
69.2
0.48
1.3
69.7
44.2
Major PPT
81.7
0.71
0.7
80.8
24.5
Minor 5ss
36
-1.6
3.5
50.3
46.3
Minor BPS
45.7
-0.3
2.3
58.61
41

Associated Gene:

Gene:
TDRD6
Ensembl Gene ID:
ENSAPLG00000021604
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038419
111926148 - 111936933
10786