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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111935406_111936862_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111935406 - 111936862
Intron Length:
1457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTCTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTGTTCTCTATA
Flanking Amino Acid:
LSSLEECLLQEKQTSCGSAK
Intron Amino Acid Position:
2303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
81.9
0.72
0.8
77.3
31.5
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
51.3
0.03
1.8
66.56
40.1

Associated Gene:

Gene:
TDRD6
Ensembl Gene ID:
ENSAPLG00000021604
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038419
111926148 - 111936933
10786