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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111941269_111941450_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111941269 - 111941450
Intron Length:
182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
NSDFDWNKLKDSVDTSRIAV
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
69.2
0.48
1
61
37.1
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
PLA2G7
Ensembl Gene ID:
ENSAPLG00000012546
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043476
111939310 - 111950400
11091
ENSAPLT00000013131
111939310 - 111947833
8524