Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111941565_111942848_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

111941565 - 111942848

Intron Length:

1284

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCCTCC

5'SS Class:

weak_major

3'SS Sequence:

TTCTGTCTCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTCAT

U12 Branch Point Sequence:

TTCATTCTACTT

Flanking Amino Acid:

EEERCLRHKQVQQRAQECIK

Intron Amino Acid Position:

204

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.8

0.37

1.3

57.8

42.6

Major BPS

83.4

0.83

0.8

83.7

25.7

Major PPT

80.6

0.69

0.8

72.8

37.5

Minor 5ss

49.6

-0

2.7

69.2

41.6

Minor BPS

45.4

-0.2

1.9

64.05

41.3

Associated Gene:

Gene:

PLA2G7

Ensembl Gene ID:

ENSAPLG00000012546

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043476

111939310 - 111950400

11091

ENSAPLT00000013131

111939310 - 111947833

8524