Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111942997_111943387_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

111942997 - 111943387

Intron Length:

391

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTACA

5'SS Class:

strong_major

3'SS Sequence:

GTTGATATTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTGAT

U12 Branch Point Sequence:

ATCCTCAGAAAT

Flanking Amino Acid:

QGFIVAAVEHRDESASATYY

Intron Amino Acid Position:

154

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

76.7

33.9

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

74.2

0.54

66.6

43.6

Minor 5ss

29.2

-2.4

2.8

33.9

41.6

Minor BPS

45.6

-0.2

1.8

63.07

40.3

Associated Gene:

Gene:

PLA2G7

Ensembl Gene ID:

ENSAPLG00000012546

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043476

111939310 - 111950400

11091

ENSAPLT00000013131

111939310 - 111947833

8524