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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111946547_111950025_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111946547 - 111950025
Intron Length:
3479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCTTTTTT
Flanking Amino Acid:
GKVFTKSRASGLSAKAPKEM
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
82.1
31
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
84.7
0.78
0.7
77.6
31.2
Minor 5ss
32.6
-2
3.1
42.1
45
Minor BPS
46
-0.2
3.6
83.03
38.5

Associated Gene:

Gene:
PLA2G7
Ensembl Gene ID:
ENSAPLG00000012546
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043476
111939310 - 111950400
11091