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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111973809_111973904_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
111973809 - 111973904
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATTCCCA
5'SS Class:
weak_major
3'SS Sequence:
TTCTATGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTGTCTGTGATT
Flanking Amino Acid:
ALATCSFAFTIQNSVDDRVY
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.9
0.24
1.1
48.3
41.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
82.9
0.74
0.9
80.5
36.8
Minor 5ss
44.8
-0.6
2.8
57.9
46.2
Minor BPS
56.5
0.28
2
78.01
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005460
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005634
111972957 - 111985609
12653