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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111973930_111974071_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111973930 - 111974071
Intron Length:
142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTGACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTTTTGACA
Flanking Amino Acid:
FTIQNSVDDRVYVVDGGHLR
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.2
0.72
1
80
37.3
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
73.1
0.72
1.1
78.22
31.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005460
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005634
111972957 - 111985609
12653