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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111975928_111976012_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111975928 - 111976012
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
ATATCATCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
AGTGTGTTAATA
Flanking Amino Acid:
QLFEGDIILPLERNALRNNS
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1
82.1
37.7
Major BPS
79.4
0.73
1
80.1
32
Major PPT
69.7
0.44
0.9
62.5
38
Minor 5ss
45.8
-0.4
2.9
67.6
43.1
Minor BPS
48.9
-0
2.1
61.51
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005460
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005634
111972957 - 111985609
12653