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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111976089_111976968_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111976089 - 111976968
Intron Length:
880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATAAGT
5'SS Class:
major
3'SS Sequence:
CTGTATCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAA
U12 Branch Point Sequence:
TCTGCTGTATCT
Flanking Amino Acid:
PIPYILADSLDLNAKGVVLQ
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
68.3
42.6
Major BPS
57
0.17
0.9
65
30.8
Major PPT
80.4
0.69
0.9
77.2
36.8
Minor 5ss
34.8
-1.7
3
41.5
44.7
Minor BPS
47.3
-0.1
2.3
70.73
46.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005460
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005634
111972957 - 111985609
12653