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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111978563_111979424_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111978563 - 111979424
Intron Length:
862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
CTGTTCCTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTAATGAACA
Flanking Amino Acid:
LLKLNRMYNCTSSLTFLDQC
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
71.7
34.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
73
0.52
1
69.4
36.8
Minor 5ss
42.7
-0.8
2.7
56.3
41.9
Minor BPS
55.3
0.16
1.9
72.56
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005460
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005634
111972957 - 111985609
12653