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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111982406_111982723_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111982406 - 111982723
Intron Length:
318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATATATTTATTT
Flanking Amino Acid:
RRMEKLHTITADGEHHWKLA
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.5
32.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.6
0.82
0.7
78.3
30.6
Minor 5ss
32.1
-2
3.1
40.8
45.4
Minor BPS
54.1
0.21
1.7
72.08
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005460
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005634
111972957 - 111985609
12653