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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111988892_111988976_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111988892 - 111988976
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TATTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTATTTTATTT
Flanking Amino Acid:
LCYAYCTPVSVGHLSGGATA
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71.3
40.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
90.9
0.92
0.7
89.2
27.2
Minor 5ss
38
-1.4
2.8
52.3
44.3
Minor BPS
55.9
0.26
1.6
72.59
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004740
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004939
111988823 - 112004762
15940